Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs4845780 chr1:152488846 T/G 5.34E-5 517 34.38 44.97 37.9 KM Plot
KIRC rs4862527 chr4:186351447 C/T 1.23E-6 512 3.53 39.5 39.17 KM Plot
KIRC rs4959176 chr6:2374910 A/C 6.21E-7 521 40 39.07 15.55 KM Plot
KIRC rs4959177 chr6:2375660 G/A 6.73E-8 508 40 39.17 15.55 KM Plot
KIRC rs4959180 chr6:2387890 T/C 3.51E-6 508 41.73 38.35 15.55 KM Plot
KIRC rs4959181 chr6:2394789 C/T 1.53E-5 510 39.62 41.27 16.83 KM Plot
KIRC rs4959182 chr6:2394797 C/T 3.14E-7 512 41.27 39.17 12.45 KM Plot
KIRC rs4959654 chr6:2391525 G/A 2.39E-6 521 39.7 39.88 15.55 KM Plot
KIRC rs4959665 chr6:2423947 G/A 6.24E-6 512 39.62 40.6 19.03 KM Plot
KIRC rs4959669 chr6:2453470 T/C 6.64E-5 520 40.3 39.07 15.55 KM Plot
KIRC rs500450 chr11:125518345 C/T 0 519 1.37 41.73 39.2 KM Plot
KIRC rs511822 chr11:125534115 C/T 3.72E-14 521 1.4 38.1 39.62 KM Plot
KIRC rs548252 chr1:152489742 A/G 2.58E-5 527 37.9 43.57 34.83 KM Plot
KIRC rs55648125 chr6:50816718 A/G 2.38E-5 515 39.35 45.17 6.73 KM Plot
KIRC rs55653665 chr6:50812984 T/C 4.42E-6 520 41 40.3 15.3 KM Plot